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Revision: 9:decc397c3b7e

Repository 'openms_peakpickerhires'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires

PeakPickerHiRes tool metadata

Miscellaneous

Name: PeakPickerHiRes

Description: Finds mass spectrometric peaks in profile mass spectra.

Id: PeakPickerHiRes

Guid: toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.6+galaxy0

Version: 2.6+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.8+galaxy0

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.6+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.3.0

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.2.0

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.1.0

PeakPickerHiRes

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

openms

2.6

package

openms-thirdparty

2.6

package

blast

2.9.0

package

ctdopts

1.4

package

Functional tests

name

inputs

outputs

required files

Test-1

in: PeakPickerHiRes_input.mzML
algorithm|signal_to_noise: 1.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels: 1
algorithm|report_FWHM: True
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|processOption: inmemory
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

PeakPickerHiRes_input.mzML
value

Test-2

in: PeakPickerHiRes_2_input.mzML
algorithm|signal_to_noise: 1.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels: 1
algorithm|report_FWHM: True
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|processOption: inmemory
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

PeakPickerHiRes_2_input.mzML
value

Test-3

in: PeakPickerHiRes_input.mzML
algorithm|signal_to_noise: 1.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels: 1
algorithm|report_FWHM: True
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|processOption: lowmemory
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

PeakPickerHiRes_input.mzML
value

Test-4

in: PeakPickerHiRes_2_input.mzML
algorithm|signal_to_noise: 1.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels: 1
algorithm|report_FWHM: True
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|processOption: lowmemory
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

PeakPickerHiRes_2_input.mzML
value

Test-5

in: PeakPickerHiRes_5_input.mzML
algorithm|signal_to_noise: 0.0
algorithm|spacing_difference_gap: 4.0
algorithm|spacing_difference: 1.5
algorithm|missing: 1
algorithm|ms_levels:
algorithm|report_FWHM: False
algorithm|report_FWHM_unit: relative
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|processOption: inmemory
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

PeakPickerHiRes_5_input.mzML
value