Revision: 3:1a125daea0d8

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids

Miscellaneous

Name: annotateMyIDs

Description: annotate a generic set of identifiers

Id: annotatemyids

Guid: toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.5.0.1

Version: 3.5.0.1

Version command string: echo $(R --version | grep version | grep -v GNU)", org.Hs.eg.db version" $(R --vanilla --slave -e "library(org.Hs.eg.db); cat(sessionInfo()\$otherPkgs\$org.Hs.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", org.Dr.eg.db version" $(R --vanilla --slave -e "library(org.Dr.eg.db); cat(sessionInfo()\$otherPkgs\$org.Dr.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", org.Dm.eg.db version" $(R --vanilla --slave -e "library(org.Dm.eg.db); cat(sessionInfo()\$otherPkgs\$org.Dm.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", org.Mm.eg.db version" $(R --vanilla --slave -e "library(org.Mm.eg.db); cat(sessionInfo()\$otherPkgs\$org.Mm.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.6.0

toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.5.0.1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.5.0.0

annotatemyids

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
bioconductor-org.hs.eg.db	3.5.0	package
bioconductor-org.mm.eg.db	3.5.0	package
bioconductor-org.dm.eg.db	3.5.0	package
bioconductor-org.dr.eg.db	3.5.0	package

Functional tests

name	inputs	outputs	required files
Test-1	organism: Hs id_type: SYMBOL id_file: genelist.txt	attributes: name	genelist.txt name
Test-2	organism: Hs rscriptOpt: True id_type: ENSEMBL id_file: ensembl_ids.tab	attributes: name attributes: name	ensembl_ids.tab name
Test-3	organism: Hs output_cols: ['ENSEMBL', 'GO', 'ONTOLOGY', 'EVIDENCE'] id_type: ENSEMBL id_file: ensembl_ids.tab	attributes: name	ensembl_ids.tab name
Test-4	organism: Hs output_cols: ['ENSEMBL', 'GO', 'ONTOLOGY', 'EVIDENCE'] id_type: ENSEMBL remove_dups: True id_file: ensembl_ids.tab	attributes: name	ensembl_ids.tab name