| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2 |
| toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.1 (this tool) |
| uniprot |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| requests | 2.7 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
tool|format: fasta infile: id_uniprot.tab tool|tool_choice: retrieve id_column: c1 |
outfile_retrieve: test1_retrieve.fasta |
id_uniprot.tab test1_retrieve.fasta |
| Test-2 |
tool|format: gff infile: id_uniprot.tab tool|tool_choice: retrieve id_column: c1 |
outfile_retrieve: test2_retrieve.gff |
id_uniprot.tab test2_retrieve.gff |
| Test-3 |
tool|from|db_uniprot_FROM: ID tool|to|category_TO: uniprot tool|to|db_uniprot_TO: GENENAME tool|from|category_FROM: uniprot infile: id_uniprot.tab tool|tool_choice: map id_column: c1 |
outfile_map: test1_map.tab |
id_uniprot.tab test1_map.tab |
| Test-4 |
tool|to|db_uniprot_TO: ID tool|to|category_TO: uniprot tool|tool_choice: map tool|from|category_FROM: oseqdb infile: id_map_refseq.txt tool|from|db_oseqdb: REFSEQ_NT_ID id_column: c1 |
outfile_map: test2_map.tab |
id_map_refseq.txt test2_map.tab |