Repository revision
1:4e73ea176c34

Repository 'rgcca'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/rgcca

RGCCA tool metadata
Miscellaneous
RGCCA
performs multiblock data analysis of several sets of variables (blocks) observed on the same group of individuals.
rgcca
toolshed.g2.bx.psu.edu/repos/iuc/rgcca/rgcca/3.0.2+galaxy1
3.0.2+galaxy1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/rgcca/rgcca/3.0.2+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/rgcca/rgcca/3.0.0+galaxy0
rgcca
Requirements (dependencies defined in the <requirements> tag set)
name version type
rgccacmd 3.0.2 package
r-base 4.1 package
Functional tests
name inputs outputs required files
Test-1 blocks: agriculture.tsv
output_selector: ['individuals', 'corcircle', 'top_variables', 'ave', 'design', 'individual_table', 'variable_table', 'rdata']
name: value
name: value
name: value
name: value
name: value
name: value
name: value
name: value
agriculture.tsv
value
Test-2 blocks: ['agriculture.tsv', 'industry.tsv', 'politic.tsv']
analyse|connection: connection.tsv
analyse|superblock: False
analyse|tau|value: 0.75
analyse|tau|bool: false
analyse|scheme: 4
output_selector: ['individuals', 'corcircle', 'top_variables', 'ave', 'design', 'individual_table', 'variable_table', 'rdata']
name: value
name: value
name: value
name: value
name: value
name: value
name: value
agriculture.tsv
industry.tsv
politic.tsv
connection.tsv
value
Test-3 blocks: ['agriculture.tsv', 'industry.tsv', 'politic.tsv']
analyse|superblock: False
analyse|supervised|block_response: 3
analyse|supervised|learning_mode: supervised
analyse|tau|value: 0.75
analyse|tau|bool: false
analyse|scheme: 4
output_selector: ['individuals', 'corcircle', 'top_variables', 'ave', 'design', 'individual_table', 'variable_table', 'rdata']
name: value
name: value
name: value
name: value
name: value
name: value
name: value
agriculture.tsv
industry.tsv
politic.tsv
value
Test-4 blocks: ['agriculture.tsv', 'industry.tsv', 'politic.tsv']
analyse|tau|value: 0.75
analyse|tau|bool: false
analyse|scheme: 4
output_selector: ['individuals', 'corcircle', 'top_variables', 'ave', 'design', 'individual_table', 'variable_table', 'rdata']
name: value
name: value
name: value
name: value
name: value
name: value
name: value
agriculture.tsv
industry.tsv
politic.tsv
value
Test-5 blocks: ['agriculture.tsv', 'industry.tsv', 'politic.tsv']
analyse|method|type: sgcca
analyse|method|family: m
analyse|tau|value: 0.75
analyse|tau|bool: false
analyse|scheme: 4
output_selector: ['individuals', 'corcircle', 'top_variables', 'ave', 'design', 'individual_table', 'variable_table', 'rdata']
name: value
name: value
name: value
name: value
name: value
name: value
name: value
agriculture.tsv
industry.tsv
politic.tsv
value
Test-6 blocks: ['agriculture.tsv', 'politic.tsv']
analyse|ncomp: 3
analyse|scale: False
analyse|method|type: pls
analyse|method|family: 2
analyse|tau|value: 0
analyse|tau|bool: false
analyse|scheme: 3
graphic|response: political_system.tsv
graphic|text: False
graphic|compx: 3
graphic|compy: 1
graphic|blockx: 2
graphic|blocky: 1
graphic|nmark: 11
output_selector: ['individuals', 'corcircle', 'top_variables', 'ave', 'design', 'individual_table', 'variable_table', 'rdata']
name: value
name: value
name: value
name: value
name: value
name: value
name: value
agriculture.tsv
politic.tsv
political_system.tsv
value