| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/rnateam/piranha/piranha/0.1.0 (this tool) |
| piranha |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| piranha | 1.2.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
background_thresh: 1 fit: True covariates_0|covariate_file: ztnbr_binning_cov1.bed covariates_1|covariate_file: ztnbr_binning_cov2.bed bin_size_reponse: 1 input: zntbr_unbinned_response.bed |
output_xml: ztnbrBinningTestModelOutput.expected.xml |
zntbr_unbinned_response.bed ztnbr_binning_cov1.bed ztnbr_binning_cov2.bed ztnbrBinningTestModelOutput.expected.xml |
| Test-2 |
background_thresh: 1 input: testPrianha_zntb_unbinned.bam fit: True bin_size_reponse: 1 |
output_xml: ztnbBinningTestModelOutput.expected.xml |
testPrianha_zntb_unbinned.bam ztnbBinningTestModelOutput.expected.xml |
| Test-3 |
background_thresh: 1 input: ztnbSimpleTest_response.bed p_threshold: 1 no_pval_correct: True |
output_xml: ztnbSimpleTest_output.expected.bed |
ztnbSimpleTest_response.bed ztnbSimpleTest_output.expected.bed |