Revision: 0:8ea738667314

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_find_clusters

Miscellaneous

Name: Seurat FindClusters

Description: find clusters of cells

Id: seurat_find_clusters

Guid: toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_find_clusters/seurat_find_clusters/2.3.1+galaxy1

Version: 2.3.1+galaxy1

Version command string: echo $(R --version | grep version | grep -v GNU)", seurat version" $(R --vanilla --slave -e "library(seurat); cat(sessionInfo()\$otherPkgs\$seurat\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_find_clusters/seurat_find_clusters/3.1.1_0.0.6+galaxy0

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_find_clusters/seurat_find_clusters/2.3.1+galaxy1 (this tool)

seurat_find_clusters

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
seurat-scripts	0.0.5	package

Functional tests

name	inputs	outputs	required files
Test-1	input: out_runpca.rds	attributes: name	out_runpca.rds name