Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.5+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.3.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.2.0 |
TargetedFileConverter |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
openms | 2.5 | package |
openms-thirdparty | 2.5 | package |
blast | 2.9.0 | package |
openjdk | 8.0.192 | package |
ctdopts | 1.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
in: ConvertTSVToTraML_1_input.tsv out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConvertTSVToTraML_1_input.tsv value |
Test-2 |
in: ConvertTSVToTraML_2_input.tsv out_type: TraML algorithm|retentionTimeInterpretation: minutes algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConvertTSVToTraML_2_input.tsv value |
Test-3 |
in: ConvertTSVToTraML_2_input.tsv out_type: TraML algorithm|retentionTimeInterpretation: seconds algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConvertTSVToTraML_2_input.tsv value |
Test-4 |
in: ConvertTSVToTraML_4_input.mrm out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConvertTSVToTraML_4_input.mrm value |
Test-5 |
in: ConvertTSVToTraML_5_input.tsv out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConvertTSVToTraML_5_input.tsv value |
Test-6 |
in: ConvertTSVToTraML_6_input.tsv out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConvertTSVToTraML_6_input.tsv value |
Test-7 |
in: ConvertTSVToTraML_7_input_Skyline.tsv out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConvertTSVToTraML_7_input_Skyline.tsv value |
Test-8 |
in: TargetedFileConverter_1_output.pqp.tmp out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_1_output.pqp.tmp value |
Test-9 |
in: TargetedFileConverter_1_output.pqp.tmp out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_1_output.pqp.tmp value |
Test-10 |
in: TargetedFileConverter_3_output.pqp.tmp out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_3_output.pqp.tmp value |
Test-11 |
in: TargetedFileConverter_3_output.pqp.tmp out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_3_output.pqp.tmp value |
Test-12 |
in: TargetedFileConverter_10_output.TraML.tmp out_type: tsv algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_10_output.TraML.tmp value |
Test-13 |
in: TargetedFileConverter_11_output.pqp.tmp out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_11_output.pqp.tmp value |
Test-14 |
in: TargetedFileConverter_8_output.TraML.tmp out_type: tsv algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: True algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_8_output.TraML.tmp value |
Test-15 |
in: TargetedFileConverter_9_output.pqp.tmp out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: True algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_9_output.pqp.tmp value |
Test-16 |
in: ConvertTSVToTraML_output.TraML out_type: tsv algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConvertTSVToTraML_output.TraML value |
Test-17 |
in: TargetedFileConverter_12_output.pqp.tmp out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: True algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_12_output.pqp.tmp value |
Test-18 |
in: TargetedFileConverter_12_input.tsv out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TargetedFileConverter_12_input.tsv value |
Test-19 |
in: ConvertTSVToTraML_5_output.TraML out_type: tsv algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConvertTSVToTraML_5_output.TraML value |
Test-20 |
in: AssayGeneratorMetabo_ams_uku_output_consensus.tsv out_type: TraML algorithm|retentionTimeInterpretation: iRT algorithm|override_group_label_check: False algorithm|force_invalid_mods: False adv_opts_cond|legacy_traml_id: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
AssayGeneratorMetabo_ams_uku_output_consensus.tsv value |