| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/semibin_generate_sequence_features/semibin_generate_sequence_features/2.0.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/semibin_generate_sequence_features/semibin_generate_sequence_features/1.5.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/semibin_generate_sequence_features/semibin_generate_sequence_features/1.1.1+galaxy0 |
| semibin_generate_sequence_features |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| semibin | 1.5.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
mode|input_fasta: input_single.fasta mode|input_bam: input_single.bam mode|select: single min_len|method: automatic ml_threshold: 4000 extra_output: coverage |
name: value name: value name: value name: value |
input_single.fasta input_single.bam value |
| Test-2 |
mode|input_fasta: input_single.fasta mode|input_bam: ['input_coassembly_sorted1.bam', 'input_coassembly_sorted2.bam', 'input_coassembly_sorted3.bam', 'input_coassembly_sorted4.bam', 'input_coassembly_sorted5.bam'] mode|select: co min_len|method: automatic ml_threshold: 4000 extra_output: coverage |
name: value name: value |
input_single.fasta input_coassembly_sorted1.bam input_coassembly_sorted2.bam input_coassembly_sorted3.bam input_coassembly_sorted4.bam input_coassembly_sorted5.bam value |
| Test-3 |
mode|multi_fasta|input_fasta: input_multi.fasta.gz mode|multi_fasta|select: concatenated mode|input_bam: ['input_multi_sorted1.bam', 'input_multi_sorted2.bam', 'input_multi_sorted3.bam', 'input_multi_sorted4.bam', 'input_multi_sorted5.bam', 'input_multi_sorted6.bam', 'input_multi_sorted7.bam', 'input_multi_sorted8.bam', 'input_multi_sorted9.bam', 'input_multi_sorted10.bam'] mode|select: multi min_len|method: automatic ml_threshold: 4000 extra_output: ['coverage', 'contigs'] |
input_multi.fasta.gz input_multi_sorted1.bam input_multi_sorted2.bam input_multi_sorted3.bam input_multi_sorted4.bam input_multi_sorted5.bam input_multi_sorted6.bam input_multi_sorted7.bam input_multi_sorted8.bam input_multi_sorted9.bam input_multi_sorted10.bam |
|
| Test-4 |
mode|multi_fasta|input_fasta: ['S1.fasta', 'S2.fasta', 'S3.fasta', 'S4.fasta', 'S5.fasta', 'S6.fasta', 'S7.fasta', 'S8.fasta', 'S9.fasta', 'S10.fasta'] mode|multi_fasta|select: multi mode|input_bam: ['input_multi_sorted1.bam', 'input_multi_sorted2.bam', 'input_multi_sorted3.bam', 'input_multi_sorted4.bam', 'input_multi_sorted5.bam', 'input_multi_sorted6.bam', 'input_multi_sorted7.bam', 'input_multi_sorted8.bam', 'input_multi_sorted9.bam', 'input_multi_sorted10.bam'] mode|select: multi min_len|method: automatic ml_threshold: 4000 |
S1.fasta S2.fasta S3.fasta S4.fasta S5.fasta S6.fasta S7.fasta S8.fasta S9.fasta S10.fasta input_multi_sorted1.bam input_multi_sorted2.bam input_multi_sorted3.bam input_multi_sorted4.bam input_multi_sorted5.bam input_multi_sorted6.bam input_multi_sorted7.bam input_multi_sorted8.bam input_multi_sorted9.bam input_multi_sorted10.bam |