| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.71 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.70 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.67 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.66 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.64 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.63 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.62 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.52 |
| fastqc |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fastqc | 0.11.8 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: 1000trimmed.fastq |
attributes: name attributes: name |
1000trimmed.fastq name |
| Test-2 |
contaminants: fastqc_contaminants.txt input_file: 1000trimmed.fastq |
attributes: name attributes: name |
1000trimmed.fastq fastqc_contaminants.txt name |
| Test-3 |
adapters: fastqc_adapters.txt input_file: 1000trimmed.fastq |
attributes: name attributes: name |
1000trimmed.fastq fastqc_adapters.txt name |
| Test-4 |
limits: fastqc_customlimits.txt input_file: 1000trimmed.fastq |
attributes: name attributes: name |
1000trimmed.fastq fastqc_customlimits.txt name |
| Test-5 |
kmers: 3 limits: fastqc_customlimits.txt input_file: 1000trimmed.fastq |
attributes: name attributes: name |
1000trimmed.fastq fastqc_customlimits.txt name |
| Test-6 |
min_length: 108 input_file: 1000trimmed.fastq |
attributes: name attributes: name |
1000trimmed.fastq name |
| Test-7 |
nogroup: True input_file: 1000trimmed.fastq |
attributes: name attributes: name |
1000trimmed.fastq name |
| Test-8 |
input_file: hisat_output_1.bam |
attributes: name attributes: name |
hisat_output_1.bam name |