| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.71 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.70 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.67 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.66 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.65 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.64 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.63 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.62 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.52 |
| fastqc |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fastqc | 0.11.6 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
contaminants: fastqc_contaminants.txt input_file: 1000gsample.fastq |
html_file: fastqc_report.html text_file: fastqc_data.txt |
1000gsample.fastq fastqc_contaminants.txt fastqc_report.html fastqc_data.txt |
| Test-2 |
limits: fastqc_customlimits.txt input_file: 1000gsample.fastq |
html_file: fastqc_report2.html text_file: fastqc_data2.txt |
1000gsample.fastq fastqc_customlimits.txt fastqc_report2.html fastqc_data2.txt |
| Test-3 |
contaminants: fastqc_contaminants.txt input_file: 1000gsample.fastq.gz |
html_file: fastqc_report.html text_file: fastqc_data.txt |
1000gsample.fastq.gz fastqc_contaminants.txt fastqc_report.html fastqc_data.txt |
| Test-4 |
contaminants: fastqc_contaminants.txt input_file: 1000gsample.fastq.bz2 |
html_file: fastqc_report.html text_file: fastqc_data.txt |
1000gsample.fastq.bz2 fastqc_contaminants.txt fastqc_report.html fastqc_data.txt |
| Test-5 |
input_file: hisat_output_1.bam |
html_file: fastqc_report_hisat.html text_file: fastqc_data_hisat.txt |
hisat_output_1.bam fastqc_report_hisat.html fastqc_data_hisat.txt |