| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathmzmlfilecacher/OpenSwathMzMLFileCacher/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathmzmlfilecacher/OpenSwathMzMLFileCacher/2.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathmzmlfilecacher/OpenSwathMzMLFileCacher/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathmzmlfilecacher/OpenSwathMzMLFileCacher/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathmzmlfilecacher/OpenSwathMzMLFileCacher/2.1.0 |
| OpenSwathMzMLFileCacher |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.5 | package |
| openms-thirdparty | 2.5 | package |
| blast | 2.9.0 | package |
| openjdk | 8.0.192 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: OpenSwathMzMLFileCacher_1_input.mzML out_type: mzML lossy_compression: True full_meta: True adv_opts_cond|lossy_mass_accuracy: -1.0 adv_opts_cond|process_lowmemory: False adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathMzMLFileCacher_1_input.mzML value |
| Test-2 |
in: OpenSwathMzMLFileCacher_2_input.chrom.mzML out_type: mzML lossy_compression: True full_meta: True adv_opts_cond|lossy_mass_accuracy: -1.0 adv_opts_cond|process_lowmemory: False adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathMzMLFileCacher_2_input.chrom.mzML value |
| Test-3 |
in: OpenSwathMzMLFileCacher_1_input.mzML out_type: sqMass lossy_compression: True full_meta: True adv_opts_cond|lossy_mass_accuracy: 0.0001 adv_opts_cond|process_lowmemory: False adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathMzMLFileCacher_1_input.mzML value |
| Test-4 |
in: OpenSwathMzMLFileCacher_3_input.tmp.sqMass out_type: mzML lossy_compression: True full_meta: True adv_opts_cond|lossy_mass_accuracy: -1.0 adv_opts_cond|process_lowmemory: False adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathMzMLFileCacher_3_input.tmp.sqMass value |
| Test-5 |
in: OpenSwathMzMLFileCacher_2_input.chrom.mzML out_type: sqMass lossy_compression: True full_meta: True adv_opts_cond|lossy_mass_accuracy: -1.0 adv_opts_cond|process_lowmemory: False adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathMzMLFileCacher_2_input.chrom.mzML value |
| Test-6 |
in: OpenSwathMzMLFileCacher_4_input.tmp.sqMass out_type: mzML lossy_compression: True full_meta: True adv_opts_cond|lossy_mass_accuracy: -1.0 adv_opts_cond|process_lowmemory: False adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathMzMLFileCacher_4_input.tmp.sqMass value |
| Test-7 |
in: OpenSwathMzMLFileCacher_1_input.mzML out_type: mzML lossy_compression: True full_meta: True adv_opts_cond|lossy_mass_accuracy: -1.0 adv_opts_cond|process_lowmemory: True adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathMzMLFileCacher_1_input.mzML value |
| Test-8 |
in: OpenSwathAnalyzer_2_swathfile.mzML out_type: mzML lossy_compression: True full_meta: True adv_opts_cond|lossy_mass_accuracy: -1.0 adv_opts_cond|process_lowmemory: False adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathAnalyzer_2_swathfile.mzML value |
| Test-9 |
in: OpenSwathAnalyzer_1_input_chrom.mzML out_type: mzML lossy_compression: True full_meta: True adv_opts_cond|lossy_mass_accuracy: -1.0 adv_opts_cond|process_lowmemory: False adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathAnalyzer_1_input_chrom.mzML value |
| Test-10 |
in: OpenSwathWorkflow_14.chrom.tmp.sqMass out_type: mzML lossy_compression: False full_meta: False adv_opts_cond|lossy_mass_accuracy: 0.0001 adv_opts_cond|process_lowmemory: False adv_opts_cond|lowmem_batchsize: 500 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathWorkflow_14.chrom.tmp.sqMass value |