Repository revision
1:ba7b0f11e470

Repository 'salsa'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/salsa

SALSA tool metadata
Miscellaneous
SALSA
scaffold long read assemblies with Hi-C
salsa
toolshed.g2.bx.psu.edu/repos/iuc/salsa/salsa/2.3+galaxy0
2.3+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/salsa/salsa/2.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/salsa/salsa/2.3+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/salsa/salsa/2.2+galaxy0
salsa
Requirements (dependencies defined in the <requirements> tag set)
name version type
salsa2 2.3 package
samtools 1.11 package
Functional tests
name inputs outputs required files
Test-1 fasta_in: test.fasta
bed_file: test.bed
cutoff: 1000
gfa_file: test.gfa1
enzyme: GATC,GANTC
iter: 3
name: value
name: value
test.fasta
test.bed
test.gfa1
value
Test-2 fasta_in: test.fasta
bed_file: test.bed
cutoff: 1000
gfa_file: test.gfa1
enzyme: GATC,GANTC
iter: 3
name: value
name: value
test.fasta
test.bed
test.gfa1
value