Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.10.7+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.10.7+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.10.7+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.10.7+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.10.7+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.10.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.10.4 |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/2.9.1.3 |
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/1.2.5 |
fastq_dump |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
sra-tools | 2.10.7 | package |
pigz | 2.3.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input|input_select: accession_number outputformat: fastqsanger input|accession: SRR044777 adv|skip_technical: True |
attributes: name |
name |
Test-2 |
input|input_select: accession_number outputformat: fastqsanger.gz input|accession: SRR925743 adv|maxID: 5 |
attributes: name |
name |
Test-3 |
input|input_select: accession_number outputformat: fastqsanger input|accession: SRR925743 adv|maxID: 5 |
attributes: name |
name |
Test-4 |
input|input_select: file_list outputformat: fastqsanger input|file_list: list_pe adv|maxID: 5 |
list_pe |
|
Test-5 |
input|input_select: file_list outputformat: fastqsanger input|file_list: list_pe2 adv|maxID: 5 |
list_pe2 |
|
Test-6 |
input|input_select: file_list outputformat: fastqsanger input|file_list: list_se adv|maxID: 5 |
list_se |
|
Test-7 |
input|input_select: accession_number outputformat: fastqsanger.gz input|accession: SRR6982805 adv|table: SEQUENCE adv|maxID: 2 |
attributes: name |
name |