Repository revision
24:e08a7ad4378b

Repository 'sra_tools'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/sra_tools

Download and Extract Reads in BAM tool metadata
Miscellaneous
format from NCBI SRA
sam_dump
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/2.10.9+galaxy0
2.10.9+galaxy0
sam-dump --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/2.11.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/2.10.9+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/2.10.8+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/1.2.5
sam_dump
Requirements (dependencies defined in the <requirements> tag set)
name version type
sra-tools 2.10.9 package
awscli 1.18.222 package
pigz 2.5 package
samtools 1.10 package
Functional tests
name inputs outputs required files
Test-1 input|accession: SRR925743
input|input_select: accession_number
outputformat: sam
adv|region: 17:41243452-41277500
name: value
value