| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.10+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.5+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.5+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.11.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.11.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.9+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.7+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.7+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.7+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.7+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.7+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.4+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.4 |
| fasterq_dump |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| sra-tools | 3.0.8 | package |
| pigz | 2.8 | package |
| samtools | 1.18 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input|accession: ERR086330 input|input_select: accession_number |
||
| Test-2 |
input|accession: SRR002702 input|input_select: accession_number adv|split: --split-files adv|skip_technical: False |
||
| Test-3 |
input|accession: ERR086330, SRR11953971 input|input_select: accession_number |
||
| Test-4 |
input|sra_file: SRR522874.sra input|input_select: sra_file adv|split: --split-files adv|skip_technical: True |
SRR522874.sra |
|
| Test-5 |
input|sra_file: SRR522874.sra input|input_select: sra_file adv|split: --split-files adv|skip_technical: False |
SRR522874.sra |
|
| Test-6 |
input|file_list: list_sra input|input_select: file_list adv|minlen: 21 |
list_sra |
|
| Test-7 |
input|file_list: sra_manifest.tabular input|input_select: file_list |
sra_manifest.tabular |
|
| Test-8 |
input|file_list: sra_manifest.tabular input|input_select: file_list adv|seq_defline: @$ac.$si/$ri $sn length=$rl |
sra_manifest.tabular |