| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/3.0.8+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/1.2.5 |
| fastq_dump |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| sra-tools | 3.0.8 | package |
| pigz | 2.8 | package |
| samtools | 1.18 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input|accession: SRR044777 input|input_select: accession_number outputformat: fastqsanger adv|skip_technical: True |
||
| Test-2 |
input|accession: SRR925743 input|input_select: accession_number outputformat: fastqsanger.gz adv|maxID: 5 |
||
| Test-3 |
input|accession: SRR925743 input|input_select: accession_number outputformat: fastqsanger adv|maxID: 5 |
||
| Test-4 |
input|file_list: list_pe input|input_select: file_list outputformat: fastqsanger adv|maxID: 5 |
list_pe |
|
| Test-5 |
input|file_list: list_pe2 input|input_select: file_list outputformat: fastqsanger adv|maxID: 5 |
list_pe2 |
|
| Test-6 |
input|file_list: list_se input|input_select: file_list outputformat: fastqsanger adv|maxID: 5 |
list_se |
|
| Test-7 |
input|accession: SRR6982805 input|input_select: accession_number outputformat: fastqsanger.gz adv|maxID: 2 adv|table: SEQUENCE |
||
| Test-8 |
input|accession: ERR086330, SRR11953971 input|input_select: accession_number outputformat: fastqsanger.gz |
||
| Test-9 |
input|accession: ERR086330, SRR11953971 input|input_select: accession_number outputformat: fastqsanger.gz adv|defline_seq: @$ac.$si/$ri $sn length=$rl |
||
| Test-10 |
input|sra_file: SRR522874.sra input|input_select: sra_file adv|defline_seq: @$sn/$ri adv|split: True adv|skip_technical: True |
SRR522874.sra |