Repository revision
7:a7f16f24e9a1

Repository 'bionano_scaffold'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold

Bionano Hybrid Scaffold tool metadata
Miscellaneous
automates the scaffolding process
bionano_scaffold
toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.6.1+galaxy3
3.6.1+galaxy3
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.7.0+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.6.1+galaxy3 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.6.1+galaxy2
toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.6.1+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.6.1+galaxy0
bionano_scaffold
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 ngs_fasta: assembly.fasta.gz
bionano_cmap: colormap_assembly.cmap
configuration_options|configuration_file: configuration.xml
configuration_options|configuration: file
conflict_filter_genome: 3
conflict_filter_sequence: 3
zip_file: True
trim_cut_sites: False
name: value
name: value
name: value
name: value
name: value
name: value
assembly.fasta.gz
colormap_assembly.cmap
configuration.xml
value
Test-2 ngs_fasta: assembly.fasta.gz
bionano_cmap: colormap_assembly.cmap
configuration_options|configuration_file: configuration.xml
configuration_options|configuration: file
conflict_filter_genome: 2
conflict_filter_sequence: 2
trim_cut_sites: False
name: value
name: value
name: value
name: value
name: value
assembly.fasta.gz
colormap_assembly.cmap
configuration.xml
value
Test-3 ngs_fasta: assembly.fasta.gz
bionano_cmap: colormap_assembly.cmap
configuration_options|configuration_file: configuration.xml
configuration_options|configuration: file
conflict_filter_genome: 2
conflict_filter_sequence: 3
zip_file: True
trim_cut_sites: False
name: value
name: value
name: value
name: value
name: value
name: value
assembly.fasta.gz
colormap_assembly.cmap
configuration.xml
value
Test-4 ngs_fasta: assembly.fasta.gz
bionano_cmap: colormap_assembly.cmap
configuration_options|enzyme: BspQI
configuration_options|configuration: vgp
conflict_filter_genome: 2
conflict_filter_sequence: 3
zip_file: True
trim_cut_sites: False
name: value
name: value
name: value
name: value
name: value
name: value
assembly.fasta.gz
colormap_assembly.cmap
value
Test-5 ngs_fasta: assembly.fasta.gz
bionano_cmap: colormap_assembly.cmap
configuration_options|configuration_file: configuration.xml
configuration_options|configuration: file
conflict_filter_genome: 3
conflict_filter_sequence: 3
trim_cut_sites: True
name: value
name: value
name: value
name: value
name: value
assembly.fasta.gz
colormap_assembly.cmap
configuration.xml
value