Repository revision
7:9027a4b529c3

Repository 'rename_scaffolds'
hg clone https://toolshed.g2.bx.psu.edu/repos/yating-l/rename_scaffolds

rename the scaffolds tool metadata
Miscellaneous
rename the scaffolds
a Galaxy tool to rename or truncate the scaffold names in the target genome so that they won't exceed 31 characters
rename_scaffold
toolshed.g2.bx.psu.edu/repos/yating-l/rename_scaffolds/rename_scaffold/2.3
2.3
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yating-l/rename_scaffolds/rename_scaffold/2.3 (this tool)
toolshed.g2.bx.psu.edu/repos/yating-l/rename_scaffolds/rename_scaffold/2.2
toolshed.g2.bx.psu.edu/repos/yating-l/rename_scaffolds/rename_scaffold/2.1
toolshed.g2.bx.psu.edu/repos/yating-l/rename_scaffolds/rename_scaffold/2.0
toolshed.g2.bx.psu.edu/repos/yating-l/rename_scaffolds/rename_scaffold/1.2
toolshed.g2.bx.psu.edu/repos/yating-l/rename_scaffolds/rename_scaffold/1.1
toolshed.g2.bx.psu.edu/repos/yating-l/rename_scaffolds/rename_scaffold/0.1.0
rename_scaffold
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 input: Dbia3.fa
manipulate_selector: rename
 attributes: name
attributes: name
 Dbia3.fa
name
Test-2 input: Dbia3.fa
manipulate_selector: truncate
 attributes: name
attributes: name
 Dbia3.fa
name
Test-3 input: sequence_with_noascii.fa
manipulate_selector: rename
 attributes: name
attributes: name
 sequence_with_noascii.fa
name
Test-4 input: sequence_with_noascii.fa
manipulate_selector: truncate
 attributes: name
attributes: name
 sequence_with_noascii.fa
name
Test-5 input: sequence_with_noascii_name_conflict.fa
manipulate_selector: truncate
 sequence_with_noascii_name_conflict.fa
Test-6 input: sequence_with_tab.fa
manipulate_selector: truncate
 attributes: name
attributes: name
 sequence_with_tab.fa
name