| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.1.1 |
| toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.1.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.6 |
| toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5 |
| toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.4 |
| toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.2 |
| abims_xcms_group |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| r-snow | 0.4_1 | package |
| bioconductor-xcms | 1.46.0 | package |
| r-batch | 1.1_4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
methods|mzwid: 0.01 methods|density_options|option: show peaklist|peaklistBool: True methods|minfrac: 0.3 peaklist|convertRTMinute: False image: faahKO.xset.RData peaklist|numDigitsMZ: 4 methods|density_options|max: 50 methods|bw: 5 peaklist|numDigitsRT: 1 methods|method: density |
log: None variableMetadata: faahKO.xset.group.variableMetadata.tsv dataMatrix: faahKO.xset.group.dataMatrix.tsv |
faahKO.xset.RData faahKO.xset.group.variableMetadata.tsv faahKO.xset.group.dataMatrix.tsv |
| Test-2 |
methods|mzwid: 0.01 methods|density_options|option: show peaklist|peaklistBool: True methods|minfrac: 0.3 peaklist|convertRTMinute: False image: faahKO-single-class.xset.merged.RData peaklist|numDigitsMZ: 4 methods|density_options|max: 50 methods|bw: 5 peaklist|numDigitsRT: 1 methods|method: density |
log: None variableMetadata: faahKO.xset.group.variableMetadata.tsv dataMatrix: faahKO.xset.group.dataMatrix.tsv |
faahKO-single-class.xset.merged.RData faahKO.xset.group.variableMetadata.tsv faahKO.xset.group.dataMatrix.tsv |
| Test-3 |
methods|mzwid: 0.01 methods|density_options|option: show methods|minfrac: 0.3 methods|density_options|max: 50 methods|bw: 5 image: faahKO-single.xset.merged.RData methods|method: density |
log: None |
faahKO-single.xset.merged.RData |
| Test-4 |
methods|mzwid: 0.01 methods|density_options|option: show methods|minfrac: 0.3 methods|density_options|max: 50 methods|bw: 5 image: MM-single.xset.merged.RData methods|method: density |
log: None |
MM-single.xset.merged.RData |
| Test-5 |
methods|mzwid: 0.01 methods|density_options|option: show methods|minfrac: 0.3 methods|density_options|max: 50 methods|bw: 5 image: faahKO.xset.group.retcor.RData methods|method: density |
log: None |
faahKO.xset.group.retcor.RData |
| Test-6 |
methods|mzwid: 0.01 methods|density_options|option: show methods|minfrac: 0.3 methods|density_options|max: 50 methods|bw: 5 image: faahKO-single.xset.merged.group.retcor.RData methods|method: density |
log: None |
faahKO-single.xset.merged.group.retcor.RData |