Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.14.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.11.4 |
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.3 |
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.5 |
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.3 |
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.1.1 |
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.0.5 |
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.0.2 |
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/6.0.2 |
mda_heatmap_gen |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
r-base | 3.4.1 | package |
openjdk | 8.0.144 | package |
Additional information about this tool |
$__tool_directory__/heatmap.sh "$__tool_directory__" "$__tool_data_path__/" "chm_name|Heat_Map_$hmname" "chm_description|$hmdesc" "matrix_files|path|$inputmatrix|name|datalayer|summary_method|$summarymethod" "row_configuration|order_method|${d_rows.rowOrderMethod}|distance_metric|${d_rows.rowDistanceMeasure}|agglomeration_method|${d_rows.rowAgglomerationMethod}|tree_covar_cuts|0|data_type|labels" "col_configuration|order_method|${d_cols.columnOrderMethod}|distance_metric|${d_cols.columnDistanceMeasure}|agglomeration_method|${d_cols.columnAgglomerationMethod}|tree_covar_cuts|0|data_type|labels" #for $op in $operations 'classification|name|${op.class_name}|path|${op.repeatinput.file_name}|category|${op.cat}' #end for 'output_location|$output'
Functional tests |
name | inputs | outputs | required files |
Test-1 |
inputmatrix: 400x400.txt hmname: testRun summarymethod: average d_rows|rowDistanceMeasure: manhattan d_rows|rowAgglomerationMethod: ward d_rows|rowOrderMethod: Hierarchical d_cols|columnDistanceMeasure: manhattan d_cols|columnAgglomerationMethod: ward d_cols|columnOrderMethod: Hierarchical |
name: value |
400x400.txt value |