Repository revision
42:2f57ac512f46

Repository 'heat_map_creation'
hg clone https://toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation

NG-CHM Generator tool metadata
Miscellaneous
Create Clustered Heat Maps
mda_heatmap_gen
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.11.4
2.11.4
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.14.0
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.11.4 (this tool)
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.3
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.5
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.3
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.1.1
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.0.5
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/2.0.2
toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/heat_map_creation/mda_heatmap_gen/6.0.2
mda_heatmap_gen
Requirements (dependencies defined in the <requirements> tag set)
name version type
r-base 3.4.1 package
openjdk 8.0.144 package
Functional tests
name inputs outputs required files
Test-1 d_rows|rowAgglomerationMethod: ward
hmname: testRun
inputmatrix: 400x400.txt
summarymethod: average
d_rows|rowDistanceMeasure: manhattan
d_cols|columnDistanceMeasure: manhattan
d_cols|columnOrderMethod: Hierarchical
d_cols|columnAgglomerationMethod: ward
d_rows|rowOrderMethod: Hierarchical
attributes: name
400x400.txt
name