| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/fairy_cov/fairy_cov/0.5.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fairy_cov/fairy_cov/0.5.7+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/fairy_cov/fairy_cov/0.5.7+galaxy0 |
| fairy_cov |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fairy | 0.5.7 | package |
| Additional information about this tool |
#import re
ln -s '$contig' 'contig.fasta' &&
ln -s '$bcsp_file' 'sketched_file.bcsp' &&
fairy coverage
'contig.fasta'
'sketched_file.bcsp'
-t "\${GALAXY_SLOTS:-3}"
-m ${minimum_ani}
-M ${min_number_kmers}
-c ${c}
-k ${k}
--min-spacing ${min_spacing}
${full_contig_name}
#if $output_type == 'semi':
--aemb-format
#end if
#if $output_type == 'max':
--maxbin-format
#end if
-o '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
contig: single_test.fasta.gz bcsp_file: single_test.fasta.gz.bcsp |
name: value |
single_test.fasta.gz single_test.fasta.gz.bcsp value |
| Test-2 |
contig: single_test.fasta.gz bcsp_file: single_test.fasta.gz.bcsp output_type: semi |
name: value |
single_test.fasta.gz single_test.fasta.gz.bcsp value |
| Test-3 |
contig: single_test.fasta.gz bcsp_file: single_test.fasta.gz.bcsp c: 45 k: 21 output_type: max |
name: value |
single_test.fasta.gz single_test.fasta.gz.bcsp value |