| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/crosscontamination_barcode_filter/crosscontamination_barcode_filter/0.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/crosscontamination_barcode_filter/crosscontamination_barcode_filter/0.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/crosscontamination_barcode_filter/crosscontamination_barcode_filter/0.1 |
| crosscontamination_barcode_filter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| r-ggplot2 | 3.1.1 | package |
| r-data.table | 1.12.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_table: test.matrix input_barcodes: celseq_barcodes.192.raw inbuilt_spec|select_use: mpi_sagar |
attributes: name attributes: name |
test.matrix celseq_barcodes.192.raw name |
| Test-2 |
inbuilt_spec|barcode_format_1|range_end: 192 input_table: test.matrix inbuilt_spec|barcode_format_1|range_start: 97 inbuilt_spec|barcode_format_0|batches: 1,3 inbuilt_spec|barcode_format_0|range_start: 1 inbuilt_spec|select_use: custom input_barcodes: celseq_barcodes.192.raw inbuilt_spec|barcode_format_0|range_end: 96 inbuilt_spec|plate_format_1|batches: 3,4 inbuilt_spec|plate_format_1|plate: 2 inbuilt_spec|plate_format_0|plate: 1 inbuilt_spec|barcode_format_1|batches: 2,4 inbuilt_spec|plate_format_0|batches: 1,2 |
attributes: name attributes: name |
test.matrix celseq_barcodes.192.raw name |
| Test-3 |
inbuilt_spec|barcode_format_1|range_end: 192 input_table: b12.matrix inbuilt_spec|plate_format_2|batches: 9,10,11,12 inbuilt_spec|barcode_format_1|range_start: 97 inbuilt_spec|plate_format_2|plate: 3 inbuilt_spec|barcode_format_0|batches: 1,3,5,7,9,11 inbuilt_spec|barcode_format_0|range_start: 1 inbuilt_spec|select_use: custom input_barcodes: celseq_barcodes.192.raw inbuilt_spec|barcode_format_0|range_end: 96 inbuilt_spec|plate_format_1|batches: 5,6,7,8 inbuilt_spec|plate_format_1|plate: 2 inbuilt_spec|plate_format_0|plate: 1 inbuilt_spec|barcode_format_1|batches: 2,4,6,8,10,12 inbuilt_spec|plate_format_0|batches: 1,2,3,4 |
attributes: name attributes: name |
b12.matrix celseq_barcodes.192.raw name |