Repository revision
7:ab12df91b47f

Repository 'mothur_make_contigs'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs

Make.contigs tool metadata
Miscellaneous
Make.contigs
Aligns paired forward and reverse fastq files to contigs as fasta and quality
mothur_make_contigs
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs/mothur_make_contigs/1.39.5.0
1.39.5.0
mothur "#help()" | sed '7q;d' | cut -d" " -f2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs/mothur_make_contigs/1.39.5.1
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs/mothur_make_contigs/1.39.5.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs/mothur_make_contigs/1.36.1.0
mothur_make_contigs
Requirements (dependencies defined in the <requirements> tag set)
name version type
mothur 1.39.5 package
Functional tests
name inputs outputs required files
Test-1 input_type|forward_fastq: Mock_S280_L001_R1_001_small.fastq
input_type|reverse_fastq: Mock_S280_L001_R2_001_small.fastq
input_type|type: regular
savelog: True
name: value
name: value
name: value
name: value
Mock_S280_L001_R1_001_small.fastq
Mock_S280_L001_R2_001_small.fastq
value
Test-2 input_type|paired_collection: paired collection
input_type|type: simple_collection
savelog: True
name: value
name: value
name: value
name: value
Mock_S280_L001_R1_001_small.fastq
Mock_S280_L001_R2_001_small.fastq
value
Test-3 input_type|paired_collection: paired collection
input_type|type: simple_collection
align: gotoh
match: 2
mismatch: -2
gapopen: -3
gapextend: -2
savelog: True
name: value
name: value
name: value
name: value
Mock_S280_L001_R1_001_small.fastq
Mock_S280_L001_R2_001_small.fastq
value
Test-4 input_type|list_paired_collection: list:paired collection
input_type|type: list_collection
savelog: True
name: value
name: value
name: value
name: value
name: value
Mock_S280_L001_R1_001_small.fastq
Mock_S280_L001_R2_001_small.fastq
test_forward.fastq
test_reverse.fastq
value