| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/14.6.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/12.27.1 |
| datasets_download_genome |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ncbi-datasets-cli | 14.6.0 | package |
| ca-certificates | 2022.9.24 | package |
| p7zip | 16.02 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
query|subcommand|taxon_positional: human query|subcommand|download_by: taxon filters|chromosomes: 21 filters|released_before: 01/01/2018 file_choices|include: ['rna', 'gff3'] |
name: value |
value |
| Test-2 |
query|subcommand|taxon_positional: human query|subcommand|download_by: taxon filters|assembly_level: ['chromosome', 'complete'] filters|chromosomes: 21 filters|released_before: 01/01/2018 file_choices|include: genome file_choices|decompress: True |
name: value |
value |
| Test-3 |
query|subcommand|taxon_positional: human query|subcommand|download_by: taxon filters|assembly_level: ['chromosome', 'complete'] filters|assembly_source: refseq filters|chromosomes: 21 filters|released_before: 01/01/2018 file_choices|include: genome file_choices|decompress: True |
name: value |
value |
| Test-4 |
query|subcommand|text_or_file|accession: GCF_000013305.1 GCF_000007445.1 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession filters|released_before: 01/01/2007 file_choices|include: ['seq-report', 'gtf', 'cds'] file_choices|decompress: True |
name: value |
value |
| Test-5 |
query|subcommand|text_or_file|inputfile: accessions.txt query|subcommand|text_or_file|text_or_file: file query|subcommand|download_by: accession filters|released_before: 01/01/2007 file_choices|include: ['seq-report', 'gff3', 'gbff'] file_choices|decompress: True |
name: value |
accessions.txt value |
| Test-6 |
query|subcommand|text_or_file|accession: GCF_000001405 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession filters|assembly_version: all filters|released_before: 01/01/2015 file_choices|include: seq-report |
||
| Test-7 |
query|subcommand|text_or_file|accession: GCF_000146045.2 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession file_choices|include: ['genome', 'protein', 'rna', 'cds'] file_choices|decompress: True |
||
| Test-8 |
query|subcommand|text_or_file|accession: GCF_000146045.2 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession file_choices|include: ['genome', 'protein', 'rna', 'cds'] |
||
| Test-9 |
query|subcommand|text_or_file|accession: GCF_000146045.2 GCF_000002945.1 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession file_choices|include: ['seq-report', 'genome'] file_choices|decompress: True |
||
| Test-10 |
query|subcommand|taxon_positional: 4932 query|subcommand|tax_exact_match: True query|subcommand|download_by: taxon file_choices|include: |
name: value |
value |