| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_gene/16.41.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_gene/16.20.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_gene/16.6.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_gene/15.19.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_gene/14.6.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_gene/14.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_gene/14.4+galaxy0 |
| datasets_download_gene |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ncbi-datasets-cli | 16.20.0 | package |
| ca-certificates | 2024.2.2 | package |
| p7zip | 16.02 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
query|subcommand|text_or_file|accession: 672 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: gene-id |
name: value name: value name: value |
value |
| Test-2 |
query|subcommand|text_or_file|accession: 2597,14433 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: gene-id |
name: value name: value name: value |
value |
| Test-3 |
query|subcommand|text_or_file|inputfile: geneids.txt query|subcommand|text_or_file|text_or_file: file query|subcommand|ortholog: Haplorrhini,Strepsirrhini query|subcommand|download_by: gene-id file_choices|kingdom_cond|include: ['gene', 'cds'] |
name: value name: value name: value |
geneids.txt value |
| Test-4 |
query|subcommand|text_or_file|accession: tp53 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: symbol file_choices|kingdom_cond|include: |
name: value |
value |
| Test-5 |
query|subcommand|text_or_file|accession: brca1 query|subcommand|text_or_file|text_or_file: text query|subcommand|taxon: house mouse query|subcommand|download_by: symbol file_choices|kingdom_cond|include: ['3p-utr', '5p-utr', 'product-report'] |
name: value name: value name: value name: value |
value |
| Test-6 |
query|subcommand|text_or_file|accession: brca1 query|subcommand|text_or_file|text_or_file: text query|subcommand|ortholog: rodentia query|subcommand|download_by: symbol file_choices|kingdom_cond|include: |
name: value |
value |
| Test-7 |
query|subcommand|text_or_file|accession: NP_000483.3 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession file_choices|kingdom_cond|include: |
name: value |
value |
| Test-8 |
query|subcommand|text_or_file|accession: NM_000546.6 NM_000492.4 query|subcommand|text_or_file|text_or_file: text query|subcommand|ortholog: all query|subcommand|download_by: accession file_choices|kingdom_cond|include: |
name: value |
value |
| Test-9 |
query|subcommand|text_or_file|accession: WP_004675351.1 query|subcommand|text_or_file|text_or_file: text query|subcommand|include_flanks_bp: 100 query|subcommand|download_by: accession file_choices|kingdom_cond|include: ['gene', 'protein'] file_choices|kingdom_cond|kingdom_sel: prok-gene |
||
| Test-10 |
query|subcommand|taxon_positional: human query|subcommand|download_by: taxon file_choices|kingdom_cond|include: |
name: value |
value |
| Test-11 |
query|subcommand|taxon_positional: human query|subcommand|download_by: taxon filters|fasta_filter_cond|fasta_filter: NP_542432.2 filters|fasta_filter_cond|fasta_filter_select: text file_choices|kingdom_cond|include: protein |
name: value name: value |
value |