| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.35.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.24.1+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.21.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.21.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.14.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.4.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.3.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/12.32.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/12.30.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/12.27.1 |
| datasets_download_genome |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ncbi-datasets-cli | 13.24.1 | package |
| ca-certificates | 2021.10.8 | package |
| p7zip | 16.02 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
query|subcommand|taxon: human query|subcommand|download_by: taxon filters|chromosomes: 21 filters|released_before: 01/01/2018 file_choices|exclude_seq: True file_choices|exclude_gff3: True file_choices|exclude_genomic_cds: True file_choices|exclude_protein: True file_choices|exclude_rna: True uncompressed: False |
name: value |
value |
| Test-2 |
query|subcommand|taxon: human query|subcommand|download_by: taxon filters|assembly_level: chromosome filters|chromosomes: 21 filters|released_before: 01/01/2018 file_choices|exclude_seq: True file_choices|exclude_gff3: True file_choices|exclude_genomic_cds: True file_choices|exclude_protein: True file_choices|exclude_rna: True uncompressed: False |
name: value |
value |
| Test-3 |
query|subcommand|text_or_file|accession: GCF_000013305.1 GCF_000007445.1 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession filters|released_before: 01/01/2007 file_choices|exclude_seq: True file_choices|exclude_gff3: True file_choices|exclude_protein: True file_choices|exclude_rna: True file_choices|include_gtf: True uncompressed: True |
name: value |
value |
| Test-4 |
query|subcommand|text_or_file|inputfile: accessions.txt query|subcommand|text_or_file|text_or_file: file query|subcommand|download_by: accession filters|released_before: 01/02/2007 file_choices|exclude_seq: True file_choices|exclude_genomic_cds: True file_choices|exclude_protein: True file_choices|exclude_rna: True file_choices|include_gbff: True uncompressed: True |
name: value |
accessions.txt value |
| Test-5 |
query|subcommand|text_or_file|accession: GCF_000001405.40 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession filters|released_before: 01/02/2007 file_choices|exclude_seq: True file_choices|exclude_gff3: True file_choices|exclude_genomic_cds: True file_choices|exclude_protein: True file_choices|exclude_rna: True uncompressed: True |
||
| Test-6 |
query|subcommand|text_or_file|accession: GCF_000146045.2 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession file_choices|exclude_seq: False file_choices|exclude_gff3: True file_choices|exclude_genomic_cds: False file_choices|exclude_protein: True file_choices|exclude_rna: False uncompressed: True |
||
| Test-7 |
query|subcommand|text_or_file|accession: GCF_000146045.2 GCF_000002945.1 query|subcommand|text_or_file|text_or_file: text query|subcommand|download_by: accession file_choices|exclude_seq: False file_choices|exclude_gff3: True file_choices|exclude_genomic_cds: True file_choices|exclude_protein: True file_choices|exclude_rna: True uncompressed: True |