Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/checkm_plot/checkm_plot/1.2.3+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/checkm_plot/checkm_plot/1.2.0+galaxy0 (this tool) |
checkm_plot |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
checkm-genome | 1.2.0 | package |
samtools | 1.15.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
bins|bins_coll: list collection bins|select: collection plot|dist_value: 100 plot|gc_window_size: 5000 plot|gc_bin_width: 0.01 plot|command: gc_plot image_type: eps dpi: 600 font_size: 8 width: 6.5 height: 3.5 |
637000110.fna |
|
Test-2 |
bins|bins_coll: list collection bins|select: collection plot|gff: list collection plot|dist_value: 100 plot|cd_window_size: 10000 plot|cd_bin_width: 0.01 plot|command: coding_plot image_type: png dpi: 600 font_size: 8 width: 6.5 height: 3.5 |
637000110.fna 637000110.gff |
|
Test-3 |
bins|bins_coll: list collection bins|select: collection plot|gff: list collection plot|tetra_profile: tetra plot|dist_value: 100 plot|td_window_size: 5000 plot|td_bin_width: 0.01 plot|command: tetra_plot image_type: pdf dpi: 600 font_size: 8 width: 6.5 height: 3.5 |
637000110.fna 637000110.gff tetra |
|
Test-4 |
bins|bins_coll: list collection bins|select: collection plot|gff: list collection plot|tetra_profile: tetra plot|dist_value: 100 plot|gc_window_size: 5000 plot|gc_bin_width: 0.01 plot|cd_window_size: 10000 plot|cd_bin_width: 0.01 plot|td_window_size: 5000 plot|td_bin_width: 0.01 plot|command: dist_plot image_type: png dpi: 600 font_size: 8 width: 6.5 height: 3.5 |
637000110.fna 637000110.gff tetra |
|
Test-5 |
bins|bins_coll: list collection bins|select: collection plot|step_size: 0.05 plot|command: nx_plot image_type: ps dpi: 600 font_size: 8 width: 6.5 height: 3.5 |
637000110.fna |
|
Test-6 |
bins|bins_coll: list collection bins|select: collection plot|fig_padding: 0.2 plot|command: len_hist image_type: svg dpi: 600 font_size: 8 width: 6.5 height: 3.5 |
637000110.fna |
|
Test-7 |
bins|bins_coll: list collection bins|select: collection plot|genes_fna: list collection plot|marker_gene_stats: marker_gene_stats.tsv plot|bin_stats_ext: bin_stats_ext.tsv plot|fig_padding: 0.2 plot|command: marker_plot image_type: png dpi: 600 font_size: 8 width: 6.5 height: 3.5 |
637000110.fna 637000110.faa marker_gene_stats.tsv bin_stats_ext.tsv |