| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathdecoygenerator/OpenSwathDecoyGenerator/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathdecoygenerator/OpenSwathDecoyGenerator/2.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathdecoygenerator/OpenSwathDecoyGenerator/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathdecoygenerator/OpenSwathDecoyGenerator/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathdecoygenerator/OpenSwathDecoyGenerator/2.1.0 |
| OpenSwathDecoyGenerator |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.5 | package |
| openms-thirdparty | 2.5 | package |
| blast | 2.9.0 | package |
| openjdk | 8.0.192 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: OpenSwathDecoyGenerator_input.TraML out_type: TraML method: pseudo-reverse decoy_tag: DECOY_ switchKR: False adv_opts_cond|min_decoy_fraction: 0.8 adv_opts_cond|aim_decoy_fraction: 1.0 adv_opts_cond|shuffle_max_attempts: 30 adv_opts_cond|shuffle_sequence_identity_threshold: 0.5 adv_opts_cond|shift_precursor_mz_shift: 0.0 adv_opts_cond|shift_product_mz_shift: 20.0 adv_opts_cond|product_mz_threshold: 0.025 adv_opts_cond|allowed_fragment_types: b,y adv_opts_cond|allowed_fragment_charges: 1,2,3,4 adv_opts_cond|enable_detection_specific_losses: False adv_opts_cond|enable_detection_unspecific_losses: False adv_opts_cond|separate: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathDecoyGenerator_input.TraML value |
| Test-2 |
in: OpenSwathDecoyGenerator_input_2.TraML out_type: TraML method: pseudo-reverse decoy_tag: DECOY_ switchKR: False adv_opts_cond|min_decoy_fraction: 0.8 adv_opts_cond|aim_decoy_fraction: 1.0 adv_opts_cond|shuffle_max_attempts: 30 adv_opts_cond|shuffle_sequence_identity_threshold: 0.5 adv_opts_cond|shift_precursor_mz_shift: 0.0 adv_opts_cond|shift_product_mz_shift: 20.0 adv_opts_cond|product_mz_threshold: 0.8 adv_opts_cond|allowed_fragment_types: b,y adv_opts_cond|allowed_fragment_charges: 1,2,3,4 adv_opts_cond|enable_detection_specific_losses: False adv_opts_cond|enable_detection_unspecific_losses: False adv_opts_cond|separate: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathDecoyGenerator_input_2.TraML value |
| Test-3 |
in: OpenSwathDecoyGenerator_input_3.TraML out_type: TraML method: pseudo-reverse decoy_tag: DECOY_ switchKR: False adv_opts_cond|min_decoy_fraction: 0.8 adv_opts_cond|aim_decoy_fraction: 1.0 adv_opts_cond|shuffle_max_attempts: 30 adv_opts_cond|shuffle_sequence_identity_threshold: 0.5 adv_opts_cond|shift_precursor_mz_shift: 0.0 adv_opts_cond|shift_product_mz_shift: 20.0 adv_opts_cond|product_mz_threshold: 0.025 adv_opts_cond|allowed_fragment_types: b,y adv_opts_cond|allowed_fragment_charges: 1,2,3,4 adv_opts_cond|enable_detection_specific_losses: False adv_opts_cond|enable_detection_unspecific_losses: False adv_opts_cond|separate: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathDecoyGenerator_input_3.TraML value |
| Test-4 |
in: OpenSwathDecoyGenerator_input_4.tsv out_type: TraML method: pseudo-reverse decoy_tag: DECOY_ switchKR: True adv_opts_cond|min_decoy_fraction: 0.4 adv_opts_cond|aim_decoy_fraction: 1.0 adv_opts_cond|shuffle_max_attempts: 30 adv_opts_cond|shuffle_sequence_identity_threshold: 0.5 adv_opts_cond|shift_precursor_mz_shift: 0.0 adv_opts_cond|shift_product_mz_shift: 20.0 adv_opts_cond|product_mz_threshold: 0.025 adv_opts_cond|allowed_fragment_types: b,y adv_opts_cond|allowed_fragment_charges: 1,2,3,4 adv_opts_cond|enable_detection_specific_losses: True adv_opts_cond|enable_detection_unspecific_losses: True adv_opts_cond|separate: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathDecoyGenerator_input_4.tsv value |