| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.55+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.55+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.53+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.4+galaxy0 |
| stacks2_tsv2bam |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| stacks | 2.55 | package |
| python | 3.7 | package |
| findutils | 4.6.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_stacks: list collection input_cat: list collection input_matches: list collection add_log: True |
name: value |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv cstacks/catalog.alleles.tsv cstacks/catalog.snps.tsv cstacks/catalog.tags.tsv sstacks/PopA_01.matches.tsv sstacks/PopA_02.matches.tsv value |
| Test-2 |
input_stacks: list collection input_cat: list collection input_matches: list collection input_type|fqinputs: ['demultiplexed/PopA_01.2.fq', 'demultiplexed/PopA_02.2.fq'] input_type|input_type_select: single popmap: denovo_map/popmap_cstacks.tsv add_log: True |
name: value |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv cstacks/catalog.alleles.tsv cstacks/catalog.snps.tsv cstacks/catalog.tags.tsv sstacks/PopA_01.matches.tsv sstacks/PopA_02.matches.tsv demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.2.fq denovo_map/popmap_cstacks.tsv value |
| Test-3 |
input_stacks: list collection input_cat: list collection input_matches: list collection input_type|fqinputs: list collection input_type|input_type_select: paired add_log: True |
name: value |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv cstacks/catalog.alleles.tsv cstacks/catalog.snps.tsv cstacks/catalog.tags.tsv sstacks/PopA_01.matches.tsv sstacks/PopA_02.matches.tsv demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.2.fq value |
| Test-4 |
input_stacks: list collection input_cat: list collection input_matches: list collection input_type|fqinputs: list:paired collection input_type|input_type_select: paired add_log: True |
name: value |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv cstacks/catalog.alleles.tsv cstacks/catalog.snps.tsv cstacks/catalog.tags.tsv sstacks/PopA_01.matches.tsv sstacks/PopA_02.matches.tsv demultiplexed/PopA_01.1.fq demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.1.fq demultiplexed/PopA_02.2.fq value |