Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.55+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.53+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.4+galaxy0 |
stacks2_tsv2bam |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
stacks | 2.53 | package |
python | 3.7 | package |
findutils | 4.6.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_cat: list collection input_matches: list collection input_stacks: list collection add_log: True |
attributes: name |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv cstacks/catalog.alleles.tsv cstacks/catalog.snps.tsv cstacks/catalog.tags.tsv sstacks/PopA_01.matches.tsv sstacks/PopA_02.matches.tsv name |
Test-2 |
input_type|fqinputs: ['demultiplexed/PopA_01.2.fq', 'demultiplexed/PopA_02.2.fq'] input_matches: list collection input_stacks: list collection input_type|input_type_select: single input_cat: list collection popmap: denovo_map/popmap_cstacks.tsv add_log: True |
attributes: name |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv cstacks/catalog.alleles.tsv cstacks/catalog.snps.tsv cstacks/catalog.tags.tsv sstacks/PopA_01.matches.tsv sstacks/PopA_02.matches.tsv demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.2.fq denovo_map/popmap_cstacks.tsv name |
Test-3 |
input_type|fqinputs: list collection input_matches: list collection input_stacks: list collection input_type|input_type_select: paired input_cat: list collection add_log: True |
attributes: name |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv cstacks/catalog.alleles.tsv cstacks/catalog.snps.tsv cstacks/catalog.tags.tsv sstacks/PopA_01.matches.tsv sstacks/PopA_02.matches.tsv demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.2.fq name |
Test-4 |
input_type|fqinputs: list:paired collection input_matches: list collection input_stacks: list collection input_type|input_type_select: paired input_cat: list collection add_log: True |
attributes: name |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv cstacks/catalog.alleles.tsv cstacks/catalog.snps.tsv cstacks/catalog.tags.tsv sstacks/PopA_01.matches.tsv sstacks/PopA_02.matches.tsv demultiplexed/PopA_01.1.fq demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.1.fq demultiplexed/PopA_02.2.fq name |