Repository revision
20:6326cd29c1c3

Repository 'hicexplorer_hicplotdistvscounts'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts

hicPlotDistVsCounts tool metadata
Miscellaneous
compute distance vs Hi-C counts plot per chromosome
hicexplorer_hicplotdistvscounts
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.7.2+galaxy0
3.7.2+galaxy0
hicPlotDistVsCounts --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.7.5+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.7.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.6+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.3.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.4.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.8.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.8.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.7.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.7.1.0
hicexplorer_hicplotdistvscounts
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.7.2 package
Functional tests
name inputs outputs required files
Test-1 matrices: small_test_matrix.h5
skipDiagonal: False
name: value
small_test_matrix.h5
value
Test-2 matrices: small_test_matrix.h5
skipDiagonal: False
outFileData_Boolean: True
name: value
name: value
small_test_matrix.h5
value
Test-3 matrices: ['small_test_matrix.h5', 'small_test_matrix.h5']
skipDiagonal: False
perchr: True
chromosomeExclude_0|chromosomeExclude: chrUextra
chromosomeExclude_1|chromosomeExclude: chrM
chromosomeExclude_2|chromosomeExclude: chr3LHet
name: value
small_test_matrix.h5
value