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hicPlotDistVsCounts tool metadata

Miscellaneous

Name: hicPlotDistVsCounts

Description: compute distance vs Hi-C counts plot per chromosome

Id: hicexplorer_hicplotdistvscounts

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.1.0

Version: 3.4.1.0

Version command string: hicPlotDistVsCounts --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.1.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.3.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.4.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.8.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.8.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.7.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.7.1.0

hicexplorer_hicplotdistvscounts

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.4.1

package

Functional tests

name

inputs

outputs

required files

Test-1

matrices: small_test_matrix.h5
skipDiagonal: False

attributes: name

small_test_matrix.h5
name

Test-2

matrices: small_test_matrix.h5
outFileData_Boolean: True
skipDiagonal: False

attributes: name
attributes: name

small_test_matrix.h5
name

Test-3

chromosomeExclude_1|chromosomeExclude: chrM
matrices: ['small_test_matrix.h5', 'small_test_matrix.h5']
chromosomeExclude_2|chromosomeExclude: chr3LHet
skipDiagonal: False
perchr: True
chromosomeExclude_0|chromosomeExclude: chrUextra

attributes: name

small_test_matrix.h5
name