Galaxy |

hicPlotDistVsCounts tool metadata

Miscellaneous

Name: hicPlotDistVsCounts

Description: compute distance vs Hi-C counts plot per chromosome

Id: hicexplorer_hicplotdistvscounts

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.3.0

Version: 3.4.3.0

Version command string: hicPlotDistVsCounts --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.6+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.3.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.3.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.4.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/2.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.8.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.8.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.7.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/1.7.1.0

hicexplorer_hicplotdistvscounts

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.4.3

package

Functional tests

name

inputs

outputs

required files

Test-1

matrices: small_test_matrix.h5
skipDiagonal: False

name: value

small_test_matrix.h5
value

Test-2

matrices: small_test_matrix.h5
skipDiagonal: False
outFileData_Boolean: True

name: value
name: value

small_test_matrix.h5
value

Test-3

matrices: ['small_test_matrix.h5', 'small_test_matrix.h5']
skipDiagonal: False
perchr: True
chromosomeExclude_0|chromosomeExclude: chrUextra
chromosomeExclude_1|chromosomeExclude: chrM
chromosomeExclude_2|chromosomeExclude: chr3LHet

name: value

small_test_matrix.h5
value