| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sambamba_sort/sambamba_sort/1.0.1+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sambamba_sort/sambamba_sort/1.0.1+galaxy1 |
| sambamba_sort |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| sambamba | 1.0.1 | package |
| Additional information about this tool |
sambamba sort
-o '${output}'
$sort_order
#if $filter
-F '${filter}'
#end if
-l $compression_level
'${input_bam}'
--tmpdir '\${TMPDIR:-.}'
--nthreads \${GALAXY_SLOTS:-4}
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bam: 1.bam sort_order: -n compression_level: 5 |
name: value |
1.bam value |
| Test-2 |
input_bam: 1.bam sort_order: compression_level: 5 |
name: value |
1.bam value |