Galaxy |

QualityControl tool metadata

Miscellaneous

Name: QualityControl

Description: Computes various QC metrics from many possible input files (only the consensusXML is required). The more optional files you provide, the more metrics you get.

Id: QualityControl

Guid: toolshed.g2.bx.psu.edu/repos/galaxyp/openms_qualitycontrol/QualityControl/2.6+galaxy0

Version: 2.6+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_qualitycontrol/QualityControl/2.8+galaxy0

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_qualitycontrol/QualityControl/2.6+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_qualitycontrol/QualityControl/2.5+galaxy0

QualityControl

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

openms

2.6

package

openms-thirdparty

2.6

package

blast

2.9.0

package

ctdopts

1.4

package

Functional tests

name

inputs

outputs

required files

Test-1

in_cm: QualityControl_1_in.consensusXML
in_raw: ['QualityControl_1_in1.mzML.gz', 'QualityControl_1_in2.mzML.gz', 'QualityControl_1_in3.mzML.gz']
in_postFDR: ['QualityControl_1_in1.featureXML', 'QualityControl_1_in2.featureXML', 'QualityControl_1_in3.featureXML']
in_contaminants: QualityControl_1.fasta
in_trafo: ['QualityControl_1_in1.trafoXML', 'QualityControl_1_in2.trafoXML', 'QualityControl_1_in3.trafoXML']
FragmentMassError|unit: auto
FragmentMassError|tolerance: 20.0
MS2_id_rate|assume_all_target: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG', 'out_cm_FLAG']

name: value
name: value
name: value

QualityControl_1_in.consensusXML
QualityControl_1_in1.mzML.gz
QualityControl_1_in2.mzML.gz
QualityControl_1_in3.mzML.gz
QualityControl_1_in1.featureXML
QualityControl_1_in2.featureXML
QualityControl_1_in3.featureXML
QualityControl_1.fasta
QualityControl_1_in1.trafoXML
QualityControl_1_in2.trafoXML
QualityControl_1_in3.trafoXML
value