| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.5.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.2.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.1.13 |
| toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.1.5 |
| pileometh |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| methyldackel | 0.3.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_source|reference_source_selector: history input_sortedAlignBAM: cg_aln.bam advanced_options|options: yes reference_source|ref_file: cg100.fa main_task|mergeContext: False main_task|task: extract advanced_options|min_mapq: 2 |
attributes: name |
cg100.fa cg_aln.bam name |
| Test-2 |
reference_source|reference_source_selector: history input_sortedAlignBAM: cg_aln.bam advanced_options|options: yes reference_source|ref_file: cg100.fa main_task|task: mbias advanced_options|min_mapq: 2 |
attributes: name |
cg100.fa cg_aln.bam name |
| Test-3 |
reference_source|reference_source_selector: history advanced_options|CHH: True input_sortedAlignBAM: cg_aln.bam advanced_options|options: yes reference_source|ref_file: cg100.fa main_task|mergeContext: False main_task|task: extract advanced_options|min_mapq: 2 |
attributes: name attributes: name |
cg100.fa cg_aln.bam name |
| Test-4 |
advanced_options|fraction: True reference_source|reference_source_selector: history input_sortedAlignBAM: cg_aln.bam advanced_options|options: yes reference_source|ref_file: cg100.fa main_task|task: extract advanced_options|min_mapq: 2 |
attributes: name |
cg100.fa cg_aln.bam name |
| Test-5 |
reference_source|reference_source_selector: history input_sortedAlignBAM: cg_aln.bam advanced_options|logit: True advanced_options|options: yes reference_source|ref_file: cg100.fa main_task|task: extract advanced_options|min_mapq: 2 |
attributes: name |
cg100.fa cg_aln.bam name |
| Test-6 |
reference_source|reference_source_selector: history advanced_options|methylKit: True input_sortedAlignBAM: cg_aln.bam advanced_options|options: yes reference_source|ref_file: cg100.fa main_task|task: extract advanced_options|min_mapq: 2 |
attributes: name |
cg100.fa cg_aln.bam name |
| Test-7 |
reference_source|reference_source_selector: history main_task|tsv: True input_sortedAlignBAM: cg_aln.bam advanced_options|options: yes reference_source|ref_file: cg100.fa main_task|task: mbias advanced_options|min_mapq: 2 |
attributes: name |
cg100.fa cg_aln.bam name |
| Test-8 |
reference_source|reference_source_selector: history main_task|tsv: True advanced_options|regionBed: cg100.bed input_sortedAlignBAM: cg_aln.bam advanced_options|options: yes reference_source|ref_file: cg100.fa main_task|task: mbias advanced_options|min_mapq: 2 |
attributes: name |
cg100.fa cg_aln.bam cg100.bed name |