| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2c+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2c (this tool) |
| qualimap_bamqc |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qualimap | 2.2.2c | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input1: test_mapped_reads.bam |
attributes: name |
test_mapped_reads.bam name |
| Test-2 |
input1: test_mapped_reads.bam per_base_coverage: True |
attributes: name attributes: name |
test_mapped_reads.bam name |
| Test-3 |
stats_regions|regions: features.gtf input1: test_mapped_reads.bam stats_regions|region_select: custom_regions |
attributes: name |
test_mapped_reads.bam features.gtf name |
| Test-4 |
stats_regions|regions: features.gtf input1: test_mapped_reads.bam stats_regions|region_select: custom_regions per_base_coverage: True |
attributes: name attributes: name |
test_mapped_reads.bam features.gtf name |
| Test-5 |
stats_regions|regions: features.gtf input1: test_mapped_reads.bam stats_regions|region_select: custom_regions stats_regions|outside_stats: True per_base_coverage: True |
attributes: name attributes: name |
test_mapped_reads.bam features.gtf name |