Repository revision
1:4cd611004dc4

Repository 'pgsnp2gd_snp'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/pgsnp2gd_snp

pgSnp to gd_snp tool metadata
Miscellaneous
pgSnp to gd_snp
Convert from pgSnp to gd_snp
pgSnp2gd_snp
toolshed.g2.bx.psu.edu/repos/devteam/pgsnp2gd_snp/pgSnp2gd_snp/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/pgsnp2gd_snp/pgSnp2gd_snp/1.0.0 (this tool)
pgSnp2gd_snp
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Additional information about this tool
#if $snptab.tab2 == "yes"
    #if $snptab.needRef.colsOnly == "addColsOnly"
        pgSnp2gd_snp.pl '$input1' -tab=${snptab.input2} -name=$indName -build=${input1.metadata.dbkey} -addColsOnly -chr=${input1.metadata.chromCol} > '$out_file1'
    #else
        pgSnp2gd_snp.pl '$input1' -tab=${snptab.input2} -name=$indName -build=${input1.metadata.dbkey} -ref=${snptab.needRef.ref} -chr=${input1.metadata.chromCol} > '$out_file1'
    #end if
#else
    pgSnp2gd_snp.pl '$input1' -name=$indName -build=${input1.metadata.dbkey} -ref=${snptab.ref} -chr=${input1.metadata.chromCol} > '$out_file1'
#end if
perl
False
Functional tests
name inputs outputs required files
Test-1 indName: na
input1: pgSnpTest.ref.txt
snptab|tab2: no
snptab|ref: 8
 output: pgSnp2snp_output.txt
 pgSnpTest.ref.txt
pgSnp2snp_output.txt