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Repository revision

Revision: 10:3218d342b0de

Repository 'mothur_anosim'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_anosim

Anosim tool metadata

Miscellaneous

Name: Anosim

Description: Non-parametric multivariate analysis of changes in community structure

Id: mothur_anosim

Guid: toolshed.g2.bx.psu.edu/repos/iuc/mothur_anosim/mothur_anosim/1.39.5.0

Version: 1.39.5.0

Version command string: mothur "#help()" | sed '7q;d' | cut -d" " -f2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_anosim/mothur_anosim/1.39.5.0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_anosim/mothur_anosim/1.36.1.0

mothur_anosim

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

mothur

1.39.5

package

Additional information about this tool

Command:

set -o pipefail; export TERM=vt100; 

## create symlinks to input datasets
ln -s '$phylip' phylip.dat &&
ln -s '$design' design.dat &&

echo 'anosim(
    phylip=phylip.dat,
    iters=$iters,
    alpha=$alpha,
    design=design.dat
)'
| sed 's/ //g'  ## mothur trips over whitespace
| mothur
| tee mothur.out.log

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

phylip: amazon.dist
design: amazon.design
savelog: True

name: value
name: value

amazon.dist
amazon.design
value