| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.11+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.11+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.11 |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10 |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.9.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.9 |
| maker |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| maker | 2.31.11 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
genome: genome.fasta est_evidences|est2genome: True est_evidences|est: est.fasta repeat_masking|repeat_source|source_type: no |
name: value name: value |
genome.fasta est.fasta value |
| Test-2 |
genome: genome.fasta organism_type: prokaryotic est_evidences|est2genome: True est_evidences|est: est.fasta repeat_masking|repeat_source|source_type: no |
name: value name: value |
genome.fasta est.fasta value |
| Test-3 |
genome: genome.fasta reannotation|maker_gff: evidences.gff3 reannotation|est_pass: True reannotation|reannotate: yes est_evidences|est2genome: True repeat_masking|repeat_source|source_type: no |
name: value name: value |
genome.fasta evidences.gff3 value |
| Test-4 |
genome: genome.fasta est_evidences|est2genome: True est_evidences|est: est.fasta abinitio_gene_prediction|snaphmm: snap.hmm abinitio_gene_prediction|aug_prediction|augustus_species: human abinitio_gene_prediction|aug_prediction|augustus_mode: builtin repeat_masking|repeat_source|source_type: no |
name: value name: value |
genome.fasta est.fasta snap.hmm value |
| Test-5 |
genome: genome.fasta est_evidences|est2genome: True est_evidences|est: est.fasta abinitio_gene_prediction|snaphmm: snap.hmm abinitio_gene_prediction|aug_prediction|augustus_model: local.tar.gz abinitio_gene_prediction|aug_prediction|augustus_mode: history repeat_masking|repeat_source|source_type: no |
name: value name: value |
genome.fasta est.fasta snap.hmm local.tar.gz value |
| Test-6 |
genome: genome.fasta est_evidences|est2genome: True est_evidences|est: est.fasta repeat_masking|repeat_source|source_type: no |
name: value name: value |
genome.fasta est.fasta value |
| Test-7 |
genome: genome.fasta est_evidences|est2genome: True est_evidences|est: est.fasta repeat_masking|repeat_source|source_type: dfam |
name: value name: value |
genome.fasta est.fasta value |
| Test-8 |
genome: genome.fasta est_evidences|est2genome: True est_evidences|est: est.fasta repeat_masking|repeat_source|dfam_lib: Dfam_partial_test.h5 repeat_masking|repeat_source|species_name: rodent repeat_masking|repeat_source|source_type: dfam_up |
name: value name: value |
genome.fasta est.fasta Dfam_partial_test.h5 value |
| Test-9 |
genome: genome.fasta est_evidences|est2genome: True est_evidences|est: non_IUPAC.fasta repeat_masking|repeat_source|source_type: no advanced|fix_nucleotides: True |
name: value name: value |
genome.fasta non_IUPAC.fasta value |