| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.9.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.9 |
| maker |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| maker | 2.31.10 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
est_evidences|est2genome: True genome: genome.fasta est_evidences|est: est.fasta repeat_masking|repeat_source|source_type: no |
attributes: name attributes: name |
genome.fasta est.fasta name |
| Test-2 |
organism_type: prokaryotic est_evidences|est2genome: True genome: genome.fasta est_evidences|est: est.fasta repeat_masking|repeat_source|source_type: no |
attributes: name attributes: name |
genome.fasta est.fasta name |
| Test-3 |
reannotation|maker_gff: evidences.gff3 reannotation|est_pass: True reannotation|reannotate: yes est_evidences|est2genome: True repeat_masking|repeat_source|source_type: no genome: genome.fasta |
attributes: name attributes: name |
genome.fasta evidences.gff3 name |
| Test-4 |
est_evidences|est: est.fasta abinitio_gene_prediction|aug_prediction|augustus_mode: builtin abinitio_gene_prediction|snaphmm: snap.hmm est_evidences|est2genome: True genome: genome.fasta abinitio_gene_prediction|aug_prediction|augustus_species: human repeat_masking|repeat_source|source_type: no |
attributes: name attributes: name |
genome.fasta est.fasta snap.hmm name |
| Test-5 |
est_evidences|est: est.fasta abinitio_gene_prediction|aug_prediction|augustus_model: local.tar.gz abinitio_gene_prediction|aug_prediction|augustus_mode: history abinitio_gene_prediction|snaphmm: snap.hmm est_evidences|est2genome: True genome: genome.fasta repeat_masking|repeat_source|source_type: no |
attributes: name attributes: name |
genome.fasta est.fasta snap.hmm local.tar.gz name |
| Test-6 |
est_evidences|est2genome: True genome: genome.fasta est_evidences|est: est.fasta repeat_masking|repeat_source|source_type: no |
attributes: name attributes: name |
genome.fasta est.fasta name |
| Test-7 |
est_evidences|est: est.fasta repeat_masking|repeat_source|repbase_file_name: fake.embl est_evidences|est2genome: True genome: genome.fasta repeat_masking|repeat_source|repbase_file: fake_repbase.embl repeat_masking|repeat_source|source_type: repbase |
attributes: name attributes: name |
genome.fasta est.fasta fake_repbase.embl name |