| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_sim/mothur_heatmap_sim/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_sim/mothur_heatmap_sim/1.36.1.0 |
| mothur_heatmap_sim |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$count' count.dat &&
#if $input.source == 'shared':
ln -s '$input.otu' input_otu.dat &&
#else
ln -s '$input.dist' input_dist.dat &&
#if $input.source == 'column':
ln -s '$input.name' input_name.dat &&
#end if
#end if
echo 'heatmap.sim(
#if $input.source == "shared":
shared=input_otu.dat,
#if $input.label:
label=${ str($input.label).replace(",","-") },
#end if
#if $input.groups:
groups=${ str($input.groups).replace(",","-") },
#end if
#if $input.calc:
calc=${ str($input.calc).replace(",","-") },
#end if
#elif $input.source == "column":
column=input_dist.dat,
name=input_name.dat,
#elif $input.source == "phylip":
phylip=input_dist.dat,
#end if
#if $count:
count=count.dat,
#end if
fontsize=$fontsize
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input|dist: amazon.dist input|source: phylip savelog: True |
name: value name: value |
amazon.dist value |
| Test-2 |
input|otu: amazon.an.shared input|source: shared savelog: True |
name: value |
amazon.an.shared value |
| Test-3 |
input|otu: amazon.an.shared input|label: ['0.03', '0.26', '0.55'] input|groups: ['forest', 'pasture'] input|calc: ['jclass', 'jest', 'sorclass', 'sorest', 'braycurtis', 'jabund', 'morisitahorn', 'sorabund', 'thetan', 'thetayc'] input|source: shared savelog: True |
name: value |
amazon.an.shared value |