Galaxy |

Sample Filter tool metadata

Miscellaneous

Name: Sample Filter

Description: Remove peaks that fail to appear in x-out-of-n (biological) samples

Id: dimspy_sample_filter

Guid: toolshed.g2.bx.psu.edu/repos/computational-metabolomics/dimspy_sample_filter/dimspy_sample_filter/2.0.0+galaxy0

Version: 2.0.0+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/dimspy_sample_filter/dimspy_sample_filter/2.0.0+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/dimspy_sample_filter/dimspy_sample_filter/1.4.0+galaxy0

dimspy_sample_filter

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

dimspy

2.0.0

package

Functional tests

name

inputs

outputs

required files

Test-1

hdf5_file_in: pm_as_bf.h5
within: False
min_fraction: 0.5
rsd_threshold:
qc_label:
delimiter: tab
hdf5_to_txt|standard: True
hdf5_to_txt|comprehensive: True
hdf5_to_txt|representation_samples: rows
hdf5_to_txt|matrix_attr: intensity

name: value
name: value
name: value

pm_as_bf.h5
value

Test-2

name: value
name: value
name: value

pm_as_bf.h5
value

Test-3

hdf5_file_in: pm_as_bf.h5
within: True
min_fraction: 0.5
rsd_threshold:
qc_label:
delimiter: tab
hdf5_to_txt|standard: True
hdf5_to_txt|comprehensive: True
hdf5_to_txt|representation_samples: rows
hdf5_to_txt|matrix_attr: intensity

name: value
name: value
name: value

pm_as_bf.h5
value