Repository revision

Revision: 3:ed25cd2323a7

Repository 'miranda'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/earlhaminst/miranda

miRanda tool metadata

Miscellaneous

Name: miRanda

Description: finds potential target sites for miRNAs in genomic sequences

Id: miranda

Guid: toolshed.g2.bx.psu.edu/repos/earlhaminst/miranda/miranda/3.3a+galaxy1

Version: 3.3a+galaxy1

Version command string: miranda --version|grep 'miranda v'

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/earlhaminst/miranda/miranda/3.3a+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/earlhaminst/miranda/miranda/3.3a

miranda

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

miranda

3.3a

package

python

3.9

package

Additional information about this tool

Command:

miranda '$microrna' '$query'
#if str($sc)
    -sc $sc
#end if
#if str($en)
    -en $en
#end if
-out '$raw_output'
&&
python '$__tool_directory__/miranda_parser.py' '$raw_output' '$tabular_output'

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

microrna: microrna.fasta
query: query.fasta

name: value

microrna.fasta
query.fasta
value