Repository revision
4:d8d9a9069586

Repository 'blast_rbh'
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh

BLAST Reciprocal Best Hits (RBH) tool metadata
Miscellaneous
from two FASTA files
blast_reciprocal_best_hits
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.11
0.1.11
python /srv/toolshed/main/var/data/repos/001/repo_1040/tools/blast_rbh/blast_rbh.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.2.0
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.11 (this tool)
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.8
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.7
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.5
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.2
blast_reciprocal_best_hits
Requirements (dependencies defined in the <requirements> tag set)
name version type
biopython 1.67 package
blast 2.5.0 package
Functional tests
name inputs outputs required files
Test-1 fasta_a: four_human_proteins.fasta
q_cover: 0.0
fasta_b: rhodopsin_proteins.fasta
identity: 0.0
seq|dbtype: prot
output: rbh_blastp_four_human_vs_rhodopsin_proteins.tabular
four_human_proteins.fasta
rhodopsin_proteins.fasta
rbh_blastp_four_human_vs_rhodopsin_proteins.tabular
Test-2 fasta_a: rhodopsin_nucs.fasta
fasta_b: three_human_mRNA.fasta
seq|dbtype: nucl
q_cover: 0.0
seq|nucl_type: megablast
identity: 0.0
output: rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular
rhodopsin_nucs.fasta
three_human_mRNA.fasta
rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular
Test-3 fasta_a: rhodopsin_nucs.fasta
fasta_b: three_human_mRNA.fasta
seq|dbtype: nucl
q_cover: 86
seq|nucl_type: megablast
identity: 92
output: rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular
rhodopsin_nucs.fasta
three_human_mRNA.fasta
rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular
Test-4 fasta_a: rhodopsin_nucs.fasta
fasta_b: three_human_mRNA.fasta
seq|dbtype: nucl
q_cover: 86
seq|nucl_type: megablast
identity: 92.5
output: rbh_none.tabular
rhodopsin_nucs.fasta
three_human_mRNA.fasta
rbh_none.tabular
Test-5 fasta_a: rhodopsin_nucs.fasta
fasta_b: three_human_mRNA.fasta
seq|dbtype: nucl
q_cover: 87
seq|nucl_type: megablast
identity: 92
output: rbh_none.tabular
rhodopsin_nucs.fasta
three_human_mRNA.fasta
rbh_none.tabular
Test-6 fasta_a: rhodopsin_nucs.fasta
fasta_b: three_human_mRNA.fasta
seq|dbtype: nucl
q_cover: 0.0
seq|nucl_type: tblastx
identity: 0.0
output: rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular
rhodopsin_nucs.fasta
three_human_mRNA.fasta
rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular
Test-7 fasta_a: three_human_mRNA.fasta
fasta_b: rhodopsin_nucs.fasta
seq|dbtype: nucl
q_cover: 0.0
seq|nucl_type: blastn
identity: 0.0
output: rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular
three_human_mRNA.fasta
rhodopsin_nucs.fasta
rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular
Test-8 fasta_a: k12_ten_proteins.fasta
q_cover: 0.0
fasta_b: k12_edited_proteins.fasta
identity: 0.0
seq|dbtype: prot
output: rbh_blastp_k12.tabular
k12_ten_proteins.fasta
k12_edited_proteins.fasta
rbh_blastp_k12.tabular
Test-9 fasta_a: k12_edited_proteins.fasta
q_cover: 0.0
fasta_b: k12_ten_proteins.fasta
identity: 0.0
seq|dbtype: prot
output: rbh_blastp_k12.tabular
k12_edited_proteins.fasta
k12_ten_proteins.fasta
rbh_blastp_k12.tabular
Test-10 fasta_a: k12_edited_proteins.fasta
q_cover: 80.0
fasta_b: k12_edited_proteins.fasta
identity: 80.0
seq|dbtype: prot
output: rbh_blastp_k12_self.tabular
k12_edited_proteins.fasta
rbh_blastp_k12_self.tabular