Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.2.0 |
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.11 (this tool) |
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.8 |
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.7 |
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.5 |
toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.2 |
blast_reciprocal_best_hits |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
biopython | 1.67 | package |
blast | 2.5.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
fasta_a: four_human_proteins.fasta q_cover: 0.0 fasta_b: rhodopsin_proteins.fasta identity: 0.0 seq|dbtype: prot |
output: rbh_blastp_four_human_vs_rhodopsin_proteins.tabular |
four_human_proteins.fasta rhodopsin_proteins.fasta rbh_blastp_four_human_vs_rhodopsin_proteins.tabular |
Test-2 |
fasta_a: rhodopsin_nucs.fasta fasta_b: three_human_mRNA.fasta seq|dbtype: nucl q_cover: 0.0 seq|nucl_type: megablast identity: 0.0 |
output: rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular |
rhodopsin_nucs.fasta three_human_mRNA.fasta rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular |
Test-3 |
fasta_a: rhodopsin_nucs.fasta fasta_b: three_human_mRNA.fasta seq|dbtype: nucl q_cover: 86 seq|nucl_type: megablast identity: 92 |
output: rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular |
rhodopsin_nucs.fasta three_human_mRNA.fasta rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular |
Test-4 |
fasta_a: rhodopsin_nucs.fasta fasta_b: three_human_mRNA.fasta seq|dbtype: nucl q_cover: 86 seq|nucl_type: megablast identity: 92.5 |
output: rbh_none.tabular |
rhodopsin_nucs.fasta three_human_mRNA.fasta rbh_none.tabular |
Test-5 |
fasta_a: rhodopsin_nucs.fasta fasta_b: three_human_mRNA.fasta seq|dbtype: nucl q_cover: 87 seq|nucl_type: megablast identity: 92 |
output: rbh_none.tabular |
rhodopsin_nucs.fasta three_human_mRNA.fasta rbh_none.tabular |
Test-6 |
fasta_a: rhodopsin_nucs.fasta fasta_b: three_human_mRNA.fasta seq|dbtype: nucl q_cover: 0.0 seq|nucl_type: tblastx identity: 0.0 |
output: rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular |
rhodopsin_nucs.fasta three_human_mRNA.fasta rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular |
Test-7 |
fasta_a: three_human_mRNA.fasta fasta_b: rhodopsin_nucs.fasta seq|dbtype: nucl q_cover: 0.0 seq|nucl_type: blastn identity: 0.0 |
output: rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular |
three_human_mRNA.fasta rhodopsin_nucs.fasta rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular |
Test-8 |
fasta_a: k12_ten_proteins.fasta q_cover: 0.0 fasta_b: k12_edited_proteins.fasta identity: 0.0 seq|dbtype: prot |
output: rbh_blastp_k12.tabular |
k12_ten_proteins.fasta k12_edited_proteins.fasta rbh_blastp_k12.tabular |
Test-9 |
fasta_a: k12_edited_proteins.fasta q_cover: 0.0 fasta_b: k12_ten_proteins.fasta identity: 0.0 seq|dbtype: prot |
output: rbh_blastp_k12.tabular |
k12_edited_proteins.fasta k12_ten_proteins.fasta rbh_blastp_k12.tabular |
Test-10 |
fasta_a: k12_edited_proteins.fasta q_cover: 80.0 fasta_b: k12_edited_proteins.fasta identity: 80.0 seq|dbtype: prot |
output: rbh_blastp_k12_self.tabular |
k12_edited_proteins.fasta rbh_blastp_k12_self.tabular |