Repository revision
4:b393815e4cb7

Repository 'xarray_select'
hg clone https://toolshed.g2.bx.psu.edu/repos/ecology/xarray_select

NetCDF xarray Selection tool metadata
Miscellaneous
extracts variable values with custom conditions on dimensions
xarray_select
toolshed.g2.bx.psu.edu/repos/ecology/xarray_select/xarray_select/2022.3.0+galaxy0
2022.3.0+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ecology/xarray_select/xarray_select/2022.3.0+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/ecology/xarray_select/xarray_select/0.20.2+galaxy0
toolshed.g2.bx.psu.edu/repos/ecology/xarray_select/xarray_select/0.18.2+galaxy0
toolshed.g2.bx.psu.edu/repos/ecology/xarray_select/xarray_select/0.15.1
xarray_select
Requirements (dependencies defined in the <requirements> tag set)
name version type
xarray 2022.3.0 package
python 3.10 package
shapely 1.8.2 package
netcdf4 1.6.0 package
pandas 1.4.3 package
geopandas 0.7.0 package
Functional tests
name inputs outputs required files
Test-1 input: dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc
var_tab: var_tab_dataset-ibi
var: phy
condi_source_coord|condi_coord|lat_dim: latitude
condi_source_coord|condi_coord|lat_val: 44.0
condi_source_coord|condi_coord|lon_dim: longitude
condi_source_coord|condi_coord|lon_val: -2.0
condi_source_coord|condi_coord|coord: single
condi_source_coord|coord_source: coord_from_stdin
name: value
dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc
var_tab_dataset-ibi
value
Test-2 input: dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc
var_tab: var_tab_dataset-ibi
var: nh4
condi_source_coord|condi_coord|coord: global
condi_source_coord|coord_source: coord_from_stdin
time|condi_datetime|condi_between|t1: 2003-12-15
time|condi_datetime|condi_between|t2: 2004-12-15
time|condi_datetime|condi_between|comparator: sl
time|condi_datetime|datetime: yes
user_choice_0|dim: nh4
user_choice_0|condi_between|value: 50.
user_choice_0|condi_between|comparator: ge
name: value
dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc
var_tab_dataset-ibi
value