| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.36.1.0 |
| mothur_dist_seqs |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$fasta' fasta.dat &&
echo 'dist.seqs(
fasta=fasta.dat,
#if $calc:
calc=$calc,
#end if
countends=$countends,
#if $cutoff:
cutoff=$cutoff,
#end if
#if $output:
output=$output,
#end if
processors='\${GALAXY_SLOTS:-8}'
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta: HMP_MOCK.v35.align savelog: True |
name: value name: value |
HMP_MOCK.v35.align value |
| Test-2 |
fasta: HMP_MOCK.v35.align calc: nogaps countends: False cutoff: 0.3 output: lt savelog: True |
name: value name: value |
HMP_MOCK.v35.align value |