Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.36.1.0 |
mothur_dist_seqs |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$fasta' fasta.dat && echo 'dist.seqs( fasta=fasta.dat, #if $calc: calc=$calc, #end if countends=$countends, #if $cutoff: cutoff=$cutoff, #end if #if $output: output=$output, #end if processors='\${GALAXY_SLOTS:-8}' )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
fasta: HMP_MOCK.v35.align savelog: True |
name: value name: value |
HMP_MOCK.v35.align value |
Test-2 |
fasta: HMP_MOCK.v35.align calc: nogaps countends: False cutoff: 0.3 output: lt savelog: True |
name: value name: value |
HMP_MOCK.v35.align value |