Repository revision
7:85a394edc247

Repository 'nanopolish_eventalign'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_eventalign

Nanopolish eventalign tool metadata
Miscellaneous
- Align nanopore events to reference k-mers
nanopolish_eventalign
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_eventalign/nanopolish_eventalign/0.13.2+galaxy1
0.13.2+galaxy1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_eventalign/nanopolish_eventalign/0.14.0+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_eventalign/nanopolish_eventalign/0.13.2+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_eventalign/nanopolish_eventalign/0.11.1
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_eventalign/nanopolish_eventalign/0.1.0
nanopolish_eventalign
Requirements (dependencies defined in the <requirements> tag set)
name version type
nanopolish 0.13.2 package
Functional tests
name inputs outputs required files
Test-1 input_merged: reads.fasta
input_reads_raw: fast5_files.tar.gz
b: reads.sorted.bam
reference_source|ref_file: draft.fa
reference_source|reference_source_selector: history
w: tig00000001:200000-200010
sam: True
name: value
name: value
reads.fasta
fast5_files.tar.gz
reads.sorted.bam
draft.fa
value
Test-2 input_merged: reads.fasta
input_reads_raw: fast5_files.tar.gz
b: reads.sorted.bam
reference_source|ref_file: draft.fa
reference_source|reference_source_selector: history
w: tig00000001:200000-200010
min_mapping_quality: 0
summary: False
scale_events: True
sam: False
print_read_names: True
name: value
name: value
reads.fasta
fast5_files.tar.gz
reads.sorted.bam
draft.fa
value
Test-3 input_merged: reads.fasta
input_reads_raw: fast5_files.tar.gz
b: reads.sorted.bam
reference_source|ref_file: draft.fa
reference_source|reference_source_selector: history
w: tig00000001:200000-200010
min_mapping_quality: 0
summary: False
scale_events: True
sam: False
print_read_names: True
name: value
name: value
reads.fasta
fast5_files.tar.gz
reads.sorted.bam
draft.fa
value